منابع مشابه
PSC: protein surface classification
We recently proposed to classify proteins by their functional surfaces. Using the structural attributes of functional surfaces, we inferred the pairwise relationships of proteins and constructed an expandable database of protein surface classification (PSC). As the functional surface(s) of a protein is the local region where the protein performs its function, our classification may reflect the ...
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This paper considers the generation of some interpretable fuzzy rules for assigning an amino acid sequence into the appropriate protein superfamily. Since the main objective of this classifier is the interpretability of rules, we have used the distribution of amino acids in the sequences of proteins as features. These features are the occurrence probabilities of six exchange groups in the seque...
متن کاملPSC: Parallel Spectral Clustering
Spectral clustering algorithm has been shown to be more effective in finding clusters than some traditional algorithms such as k-means. However, spectral clustering suffers from a scalability problem in both memory use and computational time when the size of a data set is large. To perform clustering on large data sets, we investigate two representative ways of approximating the dense similarit...
متن کاملبررسی گلیکوزیلاسیون آنتی ژن c-terminal msp1 (c-terminal merozoite surface protein) در پلاسمودیوم فالسیپاروم
مالاریا یکی از بیماری های مهم انگلی در کشورهای گرمسیری دنیا است. پلاسمودیوم فالسیپاروم انگل تک یاخته ای است که تب سه یک بدخیم را ایجاد می کند. آنتی ژن های پلاسمودیوم فالسیپاروم در سطح انگل یا در سطح سلول های آلوده ،کاندیداهای عمده جهت تولید واکسن می باشند، مانند: msp 1 و msp2 . کربوهیدرات های متصل به پروتئین های انگل مالاریا بعنوان اپی توپ های آنتی ژنیک مطرح بوده و بوسیله سیستم ایمنی میزبان تشخ...
Protein classification combining surface analysis and primary structure.
In this work, we propose a method for protein classification that combines the features extracted from both the primary structure and the surface analysis of a given protein. The surface analysis is used to find the amino acids that belong to the surface of the proteins. The most important finding of this work is to show that the features extracted from the amino acids that belong to the surfac...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2012
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gks495